GgaEX6015707 @ galGal3
Exon Skipping
Gene
ENSGALG00000000779 | MYH13
Description
NA
Coordinates
chr18:328861-334823:-
Coord C1 exon
chr18:334712-334823
Coord A exon
chr18:329021-329113
Coord C2 exon
chr18:328861-328924
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCATTTTCTCCCTGAACTAGGGA
3' ss Score
8.54
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
TGGAGAATCTGGTGCAGGGAAGACTGTGAACACAAAGCGTGTCATCCAGTATTTTGCAACAATCGCAGTTACTGGTGAGAAGAAGAAAGACCAACAGCCTAGTAAAATGCAG
Seq A exon
GGAACGCTTGAGGATCAAATCATCAGCGCCAACCCACTGCTGGAGGCCTTTGGTAATGCCAAGACTGTCAGGAATGACAACTCCTCACGCTTT
Seq C2 exon
GGAAAGTTCATCCGGATCCACTTTGGAACAACAGGCAAGCTGGCCTCTGCGGATATCGAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000779-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGTGCAGGGAAGACTGT
R:
GTTTCGATATCCGCAGAGGCC
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]