HsaEX6020964 @ hg19
Exon Skipping
Gene
ENSG00000006788 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:7571]
Coordinates
chr17:10258401-10263388:-
Coord C1 exon
chr17:10263277-10263388
Coord A exon
chr17:10261052-10261144
Coord C2 exon
chr17:10258401-10258464
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTGTTTATTATTAGGGA
3' ss Score
8.65
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
Exon sequences
Seq C1 exon
CGGAGAATCCGGGGCTGGGAAGACTGTGAACACCAAGCGTGTCATCCAGTATTTTGCAACAATTGCAGTTACCGGGGACAAGAAGAAGGAGACACAGCCAGGCAAAATGCAG
Seq A exon
GGAACCCTAGAGGATCAGATCATCCAGGCCAACCCACTGCTGGAGGCCTTTGGAAATGCCAAGACTGTGAGGAATGACAACTCCTCAAGATTT
Seq C2 exon
GGGAAGTTCATTCGGATTCATTTTGGAGCCACAGGAAAGCTGGCATCGGCAGACATCGAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-'6-7,'6-6,7-7=AN
Average complexity
A_NA
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATCCGGGGCTGGGAAG
R:
AGTTTCGATGTCTGCCGATGC
Band lengths:
173-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)