DreEX6096843 @ danRer10
Exon Skipping
Gene
ENSDARG00000102414 | wu:fd14a01
Description
wu:fd14a01 [Source:ZFIN;Acc:ZDB-GENE-030131-5336]
Coordinates
chr22:293747-294213:-
Coord C1 exon
chr22:294099-294213
Coord A exon
chr22:293916-294008
Coord C2 exon
chr22:293747-293810
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGTCTTGCAACTACATTTAGGGG
3' ss Score
5.49
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
TGGAGAATCTGGTGCAGGAAAGACTGTGAACACGAAACGTGTCATTCAGTACTTTGCAACTGTTGGTGCCATGTCTGGAGCAAAGAAACAAGAGCCTGTTGCTGGAAAAATGCAG
Seq A exon
GGGTCACTGGAGGACCAGATTGTGGCAGCAAACCCTCTGCTGGAGGCTTATGGTAATGCCAAGACTGTGAGGAATGACAACTCCTCTCGTTTT
Seq C2 exon
GGTAAATTCATCAGGATTCATTTTGGGACCACTGGAAAACTGGCCTCAGCTGACATTGAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102414-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGCAGGAAAGACTGTGA
R:
TTCAATGTCAGCTGAGGCCAG
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]