GgaEX1037873 @ galGal3
Exon Skipping
Gene
ENSGALG00000013781 | Q90WH5_CHICK
Description
NA
Coordinates
chr19:8700-9134:+
Coord C1 exon
chr19:8700-8808
Coord A exon
chr19:8892-8984
Coord C2 exon
chr19:9071-9134
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGATCTCCACTGACCACCAGGGG
3' ss Score
4.7
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
TGGAGAATCCGGAGCGGGGAAGACTGTTAATACCAAGAGGGTCATCCAGTACTTTGCCAGCATTGCCGCCATTGGCGACCGCAAAAAGGAGGTGGCAAATAGCAGCAAG
Seq A exon
GGGACCCTGGAGGATCAAATCATCCAGGCTAACCCTGCCTTGGAGGCCTTTGGCAATGCCAAGACTGTCCGCAATGACAACTCTTCACGATTT
Seq C2 exon
GGGAAGTTCATCCGGATCCACTTTGGGGCTACTGGGAAGTTGGCATCAGCTGATATCGAGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCGGGGAAGACTGTTAA
R:
GGTCTCGATATCAGCTGATGCC
Band lengths:
163-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]