DreEX0075660 @ danRer10
Exon Skipping
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10748885-10750186:+
Coord C1 exon
chr4:10748885-10748930
Coord A exon
chr4:10749900-10749979
Coord C2 exon
chr4:10750061-10750186
Length
80 bp
Sequences
Splice sites
3' ss Seq
AACTTGTGTTTTAATTGTAGCTG
3' ss Score
7.07
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
CTATTAAATCAGATATGTGCGGAGGAAAGTGCCACAGCAGTGCCAA
Seq A exon
CTGCTTGGTGAATGTGGTGGACAGCTCATATTACTGTAGTTGTGCTGCAGGATTTCAGGGAAACGGCACATATTGTGAAG
Seq C2 exon
CTATAGATGCATGTGCAGAGAGGAATGGAGGTTGCTCAGCCCATGCGGTGTGCAAGCGCACTCTTCCCGGAAGGAGAATATGCATGTGCCATCCAGGTTATGCAGGCGATGGAAATGTTTGCACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-'45-48,'45-47,46-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126622=cEGF=PU(85.7=64.3)
C2:
PF126622=cEGF=PD(9.5=4.7),PF129472=EGF_3=WD(100=86.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCAGATATGTGCGGAGGAAAGT
R:
AAGTGCAAACATTTCCATCGCC
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]