RnoEX0086553 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27414095-27417310:-
Coord C1 exon
chr7:27417265-27417310
Coord A exon
chr7:27416383-27416459
Coord C2 exon
chr7:27414095-27414220
Length
77 bp
Sequences
Splice sites
3' ss Seq
TTTGCCCTTTCCCCCTGCAGCTG
3' ss Score
13.16
5' ss Seq
CAGGCAGGT
5' ss Score
2.53
Exon sequences
Seq C1 exon
AGATCACCACAGACAACTGCAACGGGACCTGTCACACCAGTGCCAA
Seq A exon
CTGCCTTCTGGATCCAGACGGCAAAGCCTCGTGCAAATGTGCGGCAGGATTCCGAGGGAATGGAACGGTCTGCACAG
Seq C2 exon
CCATCAATGCCTGTGAGACCAGCAATGGAGGATGTTCTACAAAGGCCGACTGTAAAAGAACCACCCCAGGAAACCGGGTGTGTGTGTGCAAGGCAGGCTATACCGGCGACGGCATCGTGTGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'47-49,'47-48,48-49
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PU(30.6=68.8)
A:
PF129472=EGF_3=PD(66.7=88.9)
C2:
PF129472=EGF_3=WD(100=86.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCACCACAGACAACTGCA
R:
CGGTATAGCCTGCCTTGCAC
Band lengths:
151-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]