GgaEX1055800 @ galGal3
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56844589-56846917:-
Coord C1 exon
chr1:56846872-56846917
Coord A exon
chr1:56846196-56846272
Coord C2 exon
chr1:56844589-56844714
Length
77 bp
Sequences
Splice sites
3' ss Seq
ATCTCCTTTCACACCTCTAGCTG
3' ss Score
8.34
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
AAATCAAAGATGATGCATGTAACAACACGTGCCATACCAGTGCCAA
Seq A exon
CTGCCTTCTCCTGTCAAATGACACTGCCTATTGCAAGTGTGCAGCTGGGTTCACAGGGAATGGGACGTTCTGCACAG
Seq C2 exon
CTATCGATGCCTGTGAGACCAGCAATGGCGGCTGTTCTGCCAACGCAGAGTGTAGAAAAACAACACCTGGAAACAGAGTGTGTGTCTGCAAAGCCGGGTACACCGGAGATGGAGTAGTCTGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'39-41,'39-40,40-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PU(28.6=62.5)
A:
PF129472=EGF_3=PD(68.6=88.9)
C2:
PF129472=EGF_3=WD(100=86.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGATGATGCATGTAACAACACG
R:
AAGCAGACTACTCCATCTCCGG
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]