DreEX0075730 @ danRer10
Exon Skipping
Gene
ENSDARG00000002127 | stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:ZFIN;Acc:ZDB-GENE-031118-123]
Coordinates
chr2:31465420-31465889:+
Coord C1 exon
chr2:31465420-31465507
Coord A exon
chr2:31465596-31465650
Coord C2 exon
chr2:31465736-31465889
Length
55 bp
Sequences
Splice sites
3' ss Seq
GTCATTCTACCCCCATTTAGCTG
3' ss Score
6.56
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
GAGAAAATGGACCAGCTGCTTCAGATGATCCAGAGTGCAGACCCGACAGATGACCAGTCAGACACCTGTGAGCTCCTACAGTTGGAGG
Seq A exon
CTGCTTGCAACCAGATGGGTCCTCTCATTGATCAGAAGCTGGAAGACACTGACAG
Seq C2 exon
GAAACACTCAGAGCTGTCTGAGCTGAACGTGAAGGTCATGGAAGCTCTGTCTCTCTATGCTAAGCTAATGAATGAAGACCCAGTATACGCTATGTATGCCAAACTACAGAGCCAGCAATACTACATGCAGCAGGCCCCAAACTCTTCCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002127-'15-16,'15-15,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=0.632 C2=0.346
Domain overlap (PFAM):
C1:
PF031279=GAT=FE(36.2=100)
A:
PF031279=GAT=FE(22.5=100)
C2:
PF031279=GAT=PD(37.5=57.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGACACCTGTGAGCTCCT
R:
GCTGGCTCTGTAGTTTGGCAT
Band lengths:
148-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]