GgaEX1055866 @ galGal4
Exon Skipping
Gene
ENSGALG00000008654 | STAM
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:HGNC Symbol;Acc:HGNC:11357]
Coordinates
chr2:19527956-19530247:-
Coord C1 exon
chr2:19530160-19530247
Coord A exon
chr2:19528443-19528497
Coord C2 exon
chr2:19527956-19528109
Length
55 bp
Sequences
Splice sites
3' ss Seq
TTAATGTTCTTCTTTTCTAGCAA
3' ss Score
9.77
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GATAAAATGGACCAGCTCCTGCAGATGTTGCAAAGTGCAGATCCAACTGACGACCAGCCAGACCTCCCAGAATTACTTCATCTTGAGG
Seq A exon
CAATGTGCCACCAGATGGGACCCCTCATAGATGAAAAATTAAAAGATATAGACAG
Seq C2 exon
GAAACATTCAGAACTTTCAGAGCTCAATGTTAAAGCAATGGAGGCTCTTTCTTTGTATAACAAGTTGATGAATGAAGACCCAATGTATTCCATGTATGCAAAGCTACAAAACCAACAGTATTATATGCAGTCATCGGGTGTTTCTGGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008654-'10-14,'10-13,11-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.316 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATGGACCAGCTCCTGCAG
R:
ACAAAGAAAGAGCCTCCATTGCT
Band lengths:
141-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]