RnoEX0086632 @ rn6
Exon Skipping
Gene
ENSRNOG00000060817 | Stam
Description
signal transducing adaptor molecule [Source:RGD Symbol;Acc:1564499]
Coordinates
chr17:81247398-81248852:+
Coord C1 exon
chr17:81247398-81247485
Coord A exon
chr17:81247903-81247957
Coord C2 exon
chr17:81248699-81248852
Length
55 bp
Sequences
Splice sites
3' ss Seq
TTCAAAAATTGTCACCTTAGCGA
3' ss Score
3.52
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GATAAAATGGACCAGTTGCTACAGATGTTGCAAAGTACAGATCCCAGCGATAATCAGCCAGACTTACCAGAGCTACTTCATCTCGAAG
Seq A exon
CGATGTGTCACCAGATGGGACCTCTCATTGATGAAAAGCTGGAGGACATCGATAG
Seq C2 exon
AAAACACTCAGAACTCTCAGAACTGAATGTGAAGGTGATGGAGGCTCTCTCACTGTATACGAAGCTAATGAATGAAGACCCAGTGTACTCTGTGTACGCCAAGTCCCAGAGTCAGCAGTACTATGTGCAGGCCTCTGGTGTGTCCGCTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060817-'19-23,'19-22,20-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=0.474 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCAGACTTACCAGAGCT
R:
GACTCTGGGACTTGGCGTACA
Band lengths:
148-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]