DreEX0077393 @ danRer10
Exon Skipping
Gene
ENSDARG00000038237 | tbc1d12a
Description
TBC1 domain family, member 12a [Source:ZFIN;Acc:ZDB-GENE-030131-3920]
Coordinates
chr17:23221101-23223249:-
Coord C1 exon
chr17:23223169-23223249
Coord A exon
chr17:23221275-23221369
Coord C2 exon
chr17:23221101-23221172
Length
95 bp
Sequences
Splice sites
3' ss Seq
ATCCGGTTTTAATTGATTAGATT
3' ss Score
4.14
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AACTGTATGAGATCTTCCTGTCCAGAGCCAAAGAGAAGTGGAGGAGCTTCAGTGAGACCAGTTCAGTCAATGAAAATGAAG
Seq A exon
ATTGTGGCGTGTCACTGGCAGACCGAGAGTCTAGTCTGGATTTAATCAAGCTGGATATTTCTAGAACCTTTCCCTCGCTCTACATATTCCAGAAG
Seq C2 exon
GGTGGACCATATCATGATATATTGCACAGTGTGTTGGGGGCCTACACCTGTTATAGGCCTGACGTAGGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038237-'6-12,'6-11,9-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
PF0056613=RabGAP-TBC=FE(13.6=100)
C2:
PF0056613=RabGAP-TBC=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGATCTTCCTGTCCAGAGCC
R:
CCTACGTCAGGCCTATAACAG
Band lengths:
143-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]