MmuEX0046396 @ mm10
Exon Skipping
Gene
ENSMUSG00000048720 | Tbc1d12
Description
TBC1D12: TBC1 domain family, member 12 [Source:MGI Symbol;Acc:MGI:2384803]
Coordinates
chr19:38907772-38913262:+
Coord C1 exon
chr19:38907772-38907852
Coord A exon
chr19:38911007-38911095
Coord C2 exon
chr19:38913191-38913262
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTATCTGTTTGGTAATGCAGGTC
3' ss Score
6.43
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AACTTTATGAAATCTTTCTTTCAAGAGCAAAAGAACGTTGGAAAAGCTTCAGTGAATCAAGTTCTGAGAACGACACGGAAG
Seq A exon
GTCTATCTGTTGCTGACCGAGAGGCTAGTCTGGAATTAATTAAGTTGGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAG
Seq C2 exon
GGTGGCCCATATCACGATGTTTTGCATAGTATCTTAGGGGCATATACATGTTACAGACCTGATGTTGGTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048720_MULTIEX3-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.9=100)
A:
PF0056613=RabGAP-TBC=FE(12.8=100)
C2:
PF0056613=RabGAP-TBC=FE(10.2=100)
Main Skipping Isoform:
ENSMUST00000037302fB17899
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATCTTTCTTTCAAGAGCAAAAG
R:
ACCAACATCAGGTCTGTAACATGT
Band lengths:
143-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types