DreEX6067716 @ danRer10
Exon Skipping
Gene
ENSDARG00000073771 | tbc1d12b
Description
TBC1 domain family, member 12b [Source:ZFIN;Acc:ZDB-GENE-121214-108]
Coordinates
chr12:5399091-5399850:-
Coord C1 exon
chr12:5399770-5399850
Coord A exon
chr12:5399291-5399376
Coord C2 exon
chr12:5399091-5399162
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTGTGTTTGTTACAGTGG
3' ss Score
8.62
5' ss Seq
AAGGTTCTG
5' ss Score
2.04
Exon sequences
Seq C1 exon
ATTTGTATGAGATCTTTCTGTCGCGGGCCAAGGAGCGATGGAAGAGCTTCAGAGAAACGGGCAGTGAGATTGAGTCAGATG
Seq A exon
TGGACAGTGCCGACCGCGAGTCTAGTCTGGATCTGATCAAGCTAGACATCTCCCGCACATTCCCATCCCTCTTCATCTTCCAGAAG
Seq C2 exon
GGTGGGCCGTATCATGATCTCCTGCACAGTGTTCTGGGGGCTTACACCTGCTACAGACCTGATGTGGGATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073771-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(12.0=100)
A:
PF0056613=RabGAP-TBC=FE(12.4=100)
C2:
PF0056613=RabGAP-TBC=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTATGAGATCTTTCTGTCGCGG
R:
ATATCCCACATCAGGTCTGTAGCA
Band lengths:
151-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]