GgaEX1057301 @ galGal3
Exon Skipping
Gene
ENSGALG00000006538 | TBC1D12
Description
NA
Coordinates
chr6:21161273-21162776:+
Coord C1 exon
chr6:21161273-21161353
Coord A exon
chr6:21161873-21161967
Coord C2 exon
chr6:21162705-21162776
Length
95 bp
Sequences
Splice sites
3' ss Seq
ACTTTTGGTTTTGCTTGCAGATG
3' ss Score
10.69
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AACTCTATGAAATCTTCTTATCTAGAGCTAAGGAACGATGGAAAAGCTTCAGTGAAACAAGTTCTGAGAATGATGTAGAAG
Seq A exon
ATGCTAGTGCATCTGTTGCTGATCGTGAGGCCAGCCTGGAGCTAATTAAGTTGGATATATCACGCACATTTCCATCCCTGTATATTTTCCAGAAG
Seq C2 exon
GGTGGTCCCTATCATGATCTCCTGCATAGTGTTTTAGGAGCATATACATGTTATAGACCGGATGTGGGATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006538-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
PF0056613=RabGAP-TBC=FE(13.6=100)
C2:
PF0056613=RabGAP-TBC=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTATCTAGAGCTAAGGAACGATGG
R:
TCCCACATCCGGTCTATAACA
Band lengths:
135-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]