DreEX0079109 @ danRer10
Exon Skipping
Gene
ENSDARG00000010779 | tlk2
Description
tousled-like kinase 2 [Source:ZFIN;Acc:ZDB-GENE-060623-36]
Coordinates
chr3:19545427-19545838:+
Coord C1 exon
chr3:19545427-19545493
Coord A exon
chr3:19545587-19545630
Coord C2 exon
chr3:19545740-19545838
Length
44 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTTTCACCACTAGGCA
3' ss Score
9.14
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ACCCCAGAGAAGAAATCTAATGACCAGAGGACACGTAAAAGGAAAGGAGACCCCTTTGACAGCCAGG
Seq A exon
GCAAAGGAGGAGGAAGAGGACACAAAATTAGTGATTATTTTGAG
Seq C2 exon
TTTGCAGGCGGTAGTGGTACAGGTACCAGTCCAGCTCGTGGCATTCCTCCAGTGGCGCGCTCCTCTCCTCAGCACTCTCTATCTAATCCTCCTGCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010779-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAATGACCAGAGGACACGT
R:
AGAGAGTGCTGAGGAGAGGAG
Band lengths:
132-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]