GgaEX1058714 @ galGal3
Exon Skipping
Gene
ENSGALG00000000410 | TLK2
Description
NA
Coordinates
chr27:2276331-2278610:+
Coord C1 exon
chr27:2276331-2276400
Coord A exon
chr27:2277476-2277519
Coord C2 exon
chr27:2278515-2278610
Length
44 bp
Sequences
Splice sites
3' ss Seq
TTCTTTGTTTTTCTTTTTAGGAA
3' ss Score
13.11
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ACTCCTGAGAAAAAACAGAATGACCAGCGGAATAGAAAAAGGAAAGCAGAAGCATATGAGACCAGTCAAG
Seq A exon
GAAAAGGCACTCCTAGAGGACATAAAATTAGTGACTATTTTGAG
Seq C2 exon
TTTGCTGGGGGAAGCGGCCCAGGAACCAGTCCTGGTAGAAGTGTGCCACCAGTTGCCAGATCATCACCGCAGCATTCCTTATCCAACCCCTTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410-'7-11,'7-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACAGAATGACCAGCGGAA
R:
AATGCTGCGGTGATGATCTGG
Band lengths:
135-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]