GgaEX1058714 @ galGal4
Exon Skipping
Gene
ENSGALG00000000410 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr27:2357455-2377531:+
Coord C1 exon
chr27:2357455-2357535
Coord A exon
chr27:2369773-2369816
Coord C2 exon
chr27:2377439-2377531
Length
44 bp
Sequences
Splice sites
3' ss Seq
TTCTTTGTTTTTCTTTTTAGGAA
3' ss Score
13.11
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGATGGAAGAATTGCATAGCCTGGACCCACGAAGGCAGGAACTACTGGAGGCCAGGTTCACCGGGGTTGGTGTTGCTAAG
Seq A exon
GAAAAGGCACTCCTAGAGGACATAAAATTAGTGACTATTTTGAG
Seq C2 exon
TCGGACCTCACAATGGAAAAAATATCTGCACTAGAAAACAGTAAGAACTCTGACTTGGAGAAGAAGGAAGGGAGGATAGATGACTTACTAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410_MULTIEX1-5/8=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.910 A=1.000 C2=0.677
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000000559fB32
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGCATAGCCTGGACCCAC
R:
TCCTCCCTTCCTTCTTCTCCA
Band lengths:
147-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]