DreEX0079110 @ danRer10
Exon Skipping
Gene
ENSDARG00000010779 | tlk2
Description
tousled-like kinase 2 [Source:ZFIN;Acc:ZDB-GENE-060623-36]
Coordinates
chr3:19545587-19548067:+
Coord C1 exon
chr3:19545587-19545630
Coord A exon
chr3:19545740-19545838
Coord C2 exon
chr3:19547960-19548067
Length
99 bp
Sequences
Splice sites
3' ss Seq
AATGGTTTGTTTTTGTGTAGTTT
3' ss Score
5.8
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCAAAGGAGGAGGAAGAGGACACAAAATTAGTGATTATTTTGAG
Seq A exon
TTTGCAGGCGGTAGTGGTACAGGTACCAGTCCAGCTCGTGGCATTCCTCCAGTGGCGCGCTCCTCTCCTCAGCACTCTCTATCTAATCCTCCTGCTGCC
Seq C2 exon
GTGCAGCAAGGAAGCCCCTCCTCCATCAGTTCAGTAAACACAGACCACTCCCACACCTCCACCTCCCACAAGCCAGCCTCAATACACACTCAGCACCGAGCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010779-'9-11,'9-9,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGGAGGAGGAAGAGGAC
R:
GCTCGGTGCTGAGTGTGTATT
Band lengths:
145-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]