GgaEX1058715 @ galGal3
Exon Skipping
Gene
ENSGALG00000000410 | TLK2
Description
NA
Coordinates
chr27:2277476-2282150:+
Coord C1 exon
chr27:2277476-2277519
Coord A exon
chr27:2278515-2278610
Coord C2 exon
chr27:2282052-2282150
Length
96 bp
Sequences
Splice sites
3' ss Seq
AAATCTATTGCTTTGGCCAGTTT
3' ss Score
2.71
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GAAAAGGCACTCCTAGAGGACATAAAATTAGTGACTATTTTGAG
Seq A exon
TTTGCTGGGGGAAGCGGCCCAGGAACCAGTCCTGGTAGAAGTGTGCCACCAGTTGCCAGATCATCACCGCAGCATTCCTTATCCAACCCCTTACCA
Seq C2 exon
CAGGCCCAGCAAGGCAGCCCATCTTCTACGGGATCAGGGAACACTGAGCATTCCTGCACTTCCCAAAAACAGATTTCCATCCAGCACAAACAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410-'9-13,'9-11,10-13=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAGGCACTCCTAGAGGACA
R:
CTGTGACTGTTTGTGCTGGATG
Band lengths:
143-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]