RnoEX0090877 @ rn6
Exon Skipping
Gene
ENSRNOG00000006285 | Tlk2
Description
tousled-like kinase 2 [Source:RGD Symbol;Acc:1310907]
Coordinates
chr10:93440649-93451644:+
Coord C1 exon
chr10:93440649-93440692
Coord A exon
chr10:93441420-93441515
Coord C2 exon
chr10:93451477-93451644
Length
96 bp
Sequences
Splice sites
3' ss Seq
CATTTTTCCCTGTTGGCCAGTTT
3' ss Score
5.23
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
GGAAAGGCACTCCTAGGGGACATAAAATTAGTGATTACTTTGAG
Seq A exon
TTTGCTGGGGGAAGCGGGCCAGGAACCAGCCCTGGCAGAAGTGTTCCACCAGTTGCACGATCCTCACCGCAACATTCCTTATCCAATCCCTTACCG
Seq C2 exon
CGTCGAGTAGAACAGCCTCTCTATGGTTTAGATGGCAGTACTGCAAAGGAGGCCTCAGAAGAGCAGTCTGCCCTGCCAACCCTCATGTCAGTGATGTTAGCAAAACCTCGACTTGACACAGAGCAGTTAGCGCCAAGGGGAGCTGGCCTCTGCTTCACTTTCGTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006285_MULTIEX1-4/5=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.726
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGGCACTCCTAGGGGACA
R:
GCGCTAACTGCTCTGTGTCAA
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]