RnoEX0090878 @ rn6
Exon Skipping
Gene
ENSRNOG00000006285 | Tlk2
Description
tousled-like kinase 2 [Source:RGD Symbol;Acc:1310907]
Coordinates
chr10:93441420-93451644:+
Coord C1 exon
chr10:93441420-93441515
Coord A exon
chr10:93442521-93442571
Coord C2 exon
chr10:93451477-93451644
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATTGCTGTTCTCTTTTCCAGAAC
3' ss Score
11.37
5' ss Seq
GAGGTGCTC
5' ss Score
2.13
Exon sequences
Seq C1 exon
TTTGCTGGGGGAAGCGGGCCAGGAACCAGCCCTGGCAGAAGTGTTCCACCAGTTGCACGATCCTCACCGCAACATTCCTTATCCAATCCCTTACCG
Seq A exon
AACCATTCAACCTCTTCAATAGGATGTTGTTCAAAAATGACCTTAACAGAG
Seq C2 exon
CGTCGAGTAGAACAGCCTCTCTATGGTTTAGATGGCAGTACTGCAAAGGAGGCCTCAGAAGAGCAGTCTGCCCTGCCAACCCTCATGTCAGTGATGTTAGCAAAACCTCGACTTGACACAGAGCAGTTAGCGCCAAGGGGAGCTGGCCTCTGCTTCACTTTCGTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006285_MULTIEX1-5/5=4-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.706 C2=0.726
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000066484fB15145
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAGAAGTGTTCCACCAG
R:
AGACTGCTCTTCTGAGGCCTC
Band lengths:
134-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]