RnoEX0090875 @ rn6
Exon Skipping
Gene
ENSRNOG00000006285 | Tlk2
Description
tousled-like kinase 2 [Source:RGD Symbol;Acc:1310907]
Coordinates
chr10:93438715-93451644:+
Coord C1 exon
chr10:93438715-93438786
Coord A exon
chr10:93439729-93439798
Coord C2 exon
chr10:93451477-93451644
Length
70 bp
Sequences
Splice sites
3' ss Seq
ACATGCATGGTATTTAACAGACT
3' ss Score
4.77
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGGCCACTCAACAGTGAGTCTTCCAACCAGAGTTTGTGCAGTGTGGGGTCCTTGAGTGATAAAGAAGTAGAG
Seq A exon
ACTCCTGAGAAAAAGCAGAATGACCAGCGAAATCGGAAAAGAAAAGCTGAACCATATGAAACTAGCCAAG
Seq C2 exon
CGTCGAGTAGAACAGCCTCTCTATGGTTTAGATGGCAGTACTGCAAAGGAGGCCTCAGAAGAGCAGTCTGCCCTGCCAACCCTCATGTCAGTGATGTTAGCAAAACCTCGACTTGACACAGAGCAGTTAGCGCCAAGGGGAGCTGGCCTCTGCTTCACTTTCGTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006285_MULTIEX1-2/5=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.726
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAGTTTGTGCAGTGTGG
R:
GCGCTAACTGCTCTGTGTCAA
Band lengths:
180-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]