RnoINT0151411 @ rn6
Intron Retention
Gene
ENSRNOG00000006285 | Tlk2
Description
tousled-like kinase 2 [Source:RGD Symbol;Acc:1310907]
Coordinates
chr10:93440649-93441515:+
Coord C1 exon
chr10:93440649-93440692
Coord A exon
chr10:93440693-93441419
Coord C2 exon
chr10:93441420-93441515
Length
727 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CATTTTTCCCTGTTGGCCAGTTT
3' ss Score
5.23
Exon sequences
Seq C1 exon
GGAAAGGCACTCCTAGGGGACATAAAATTAGTGATTACTTTGAG
Seq A exon
GTAAGTTAAATTGGGGGTTAAAAACAACCTCCAGTGTCTTTAAACAACCTAATAATCCTCTTGTGTATTTAAGGCATTAGAAAGCAATATTTTGCCTTTACTGTGATCTTGCCCTTTCTCTTTCCATCTTCATCAAACTAATGTTGCCCATCTTGTAATTAGAAGGACTGCTGCCGATTGCTAGGTTTCAATTTTGTATCATGTGTCTTGTCTGTGATGATAGAAGAAGTCACTACGAAGTGCACTTTCTCTTGGCCAGATTAGGTTTTGTGTCTTTCAGTGATTAAGGTACAATGACTTGTCTCTCCTTCGGTCCCTCTCCCTCAGCTTAGTGGAATGTGTGTGTAGTGAGCTCAGTGATTCATTGTTAAGTGGTTACTAAAGATGACTAACACCTTCTACACTACTGTCTTTCTGCTTCATGTATTTTGAGACTGAGAGGGGGTGGGGAGATGCATTCTTCTCTCATGTCTGTCCAAAGCCATGCATACTTTCAGCTTTCAACCCATGTATTCTATAGATCTTGTTACATTTCTTTGGGAGTTCTTTCTCAAAACTCTCATTGAAAAGATAAATTTGGCTTACATGGCATTTTATCTCTAGAATGAGATGTATTGACTTAAAGGGCCATGTGTAATTAAGACCTGTTTGTATATTAATCTTTTACTCTCCTCTGAAGCATGGTACTGTTTTGAATTATTCATATCCATTTTTCCCTGTTGGCCAG
Seq C2 exon
TTTGCTGGGGGAAGCGGGCCAGGAACCAGCCCTGGCAGAAGTGTTCCACCAGTTGCACGATCCTCACCGCAACATTCCTTATCCAATCCCTTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006285:ENSRNOT00000066484:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]