RnoEX0090874 @ rn6
Exon Skipping
Gene
ENSRNOG00000006285 | Tlk2
Description
tousled-like kinase 2 [Source:RGD Symbol;Acc:1310907]
Coordinates
chr10:93417815-93451644:+
Coord C1 exon
chr10:93417815-93417897
Coord A exon
chr10:93438715-93438786
Coord C2 exon
chr10:93451477-93451644
Length
72 bp
Sequences
Splice sites
3' ss Seq
ACAAAACATTTCCCTTCCAGGGG
3' ss Score
8.26
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AAATGATGGAAGAACTGCACAGCCTGGACCCACGGAGGCAGGAGTTACTGGAGGCCAGGTTCACTGGGGTTGGCGTAAGTAAG
Seq A exon
GGGCCACTCAACAGTGAGTCTTCCAACCAGAGTTTGTGCAGTGTGGGGTCCTTGAGTGATAAAGAAGTAGAG
Seq C2 exon
CGTCGAGTAGAACAGCCTCTCTATGGTTTAGATGGCAGTACTGCAAAGGAGGCCTCAGAAGAGCAGTCTGCCCTGCCAACCCTCATGTCAGTGATGTTAGCAAAACCTCGACTTGACACAGAGCAGTTAGCGCCAAGGGGAGCTGGCCTCTGCTTCACTTTCGTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006285_MULTIEX1-1/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=1.000 C2=0.726
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAAGAACTGCACAGCCTG
R:
ATCACTGACATGAGGGTTGGC
Band lengths:
173-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]