MmuEX0047471 @ mm10
Exon Skipping
Gene
ENSMUSG00000020694 | Tlk2
Description
tousled-like kinase 2 (Arabidopsis) [Source:MGI Symbol;Acc:MGI:1346023]
Coordinates
chr11:105207380-105209837:+
Coord C1 exon
chr11:105207380-105207451
Coord A exon
chr11:105208853-105208921
Coord C2 exon
chr11:105209794-105209837
Length
69 bp
Sequences
Splice sites
3' ss Seq
CATGCATGGTGTTTAACAGACTC
3' ss Score
-14.95
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGGCCACTCAACAGTGAGTCTTCCAACCAGAGTCTGTGCAGCGTGGGGTCGTTGAGTGATAAAGAAGTAGAG
Seq A exon
CTCCTGAGAAAAAGCAGAATGACCAGCGAAATCGGAAAAGGAAAGCCGAGCCATATGACACTAGCCAAG
Seq C2 exon
GGAAAGGCACTCCTAGGGGACATAAAATTAGTGATTACTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020694-'16-18,'16-17,17-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.991 A=1.000 C2=0.993
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAACAGTGAGTCTTCCAACCA
R:
AATTTTATGTCCCCTAGGAGTGCC
Band lengths:
95-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types