GgaEX1058713 @ galGal4
Exon Skipping
Gene
ENSGALG00000000410 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr27:2366364-2369816:+
Coord C1 exon
chr27:2366364-2366435
Coord A exon
chr27:2368628-2368697
Coord C2 exon
chr27:2369773-2369816
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTGAAGTATTGTTTAACAGACT
3' ss Score
3.81
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GGTCCATTAAATAGCGAGTCTTCCAACCAGAGCTTATGCAGCGTGGGTTCTCTCAGTGATAAAGAACTGGAG
Seq A exon
ACTCCTGAGAAAAAACAGAATGACCAGCGGAATAGAAAAAGGAAAGCAGAAGCATATGAGACCAGTCAAG
Seq C2 exon
GAAAAGGCACTCCTAGAGGACATAAAATTAGTGACTATTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410_MULTIEX1-4/8=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.993 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCATTAAATAGCGAGTCTTCCA
R:
CTAATTTTATGTCCTCTAGGAGTGCC
Band lengths:
103-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]