DreEX6016095 @ danRer10
Exon Skipping
Gene
ENSDARG00000010779 | tlk2
Description
tousled-like kinase 2 [Source:ZFIN;Acc:ZDB-GENE-060623-36]
Coordinates
chr3:19541044-19545630:+
Coord C1 exon
chr3:19541044-19541115
Coord A exon
chr3:19545427-19545493
Coord C2 exon
chr3:19545587-19545630
Length
67 bp
Sequences
Splice sites
3' ss Seq
TCGTCTCTTTTCCTGGCCAGACC
3' ss Score
7.28
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GGATCTGGACACAACGAGTCCTCCAACCAGAGCTTGTGTAGTGTGGGCTCTCTCAGTGACAAAGAATTGGAG
Seq A exon
ACCCCAGAGAAGAAATCTAATGACCAGAGGACACGTAAAAGGAAAGGAGACCCCTTTGACAGCCAGG
Seq C2 exon
GCAAAGGAGGAGGAAGAGGACACAAAATTAGTGATTATTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010779-'6-8,'6-6,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTGGACACAACGAGTC
R:
CTAATTTTGTGTCCTCTTCCTCCTCC
Band lengths:
103-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]