BtaEX0036538 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015713 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr19:47558619-47612583:+
Coord C1 exon
chr19:47558619-47558701
Coord A exon
chr19:47599496-47599565
Coord C2 exon
chr19:47612416-47612583
Length
70 bp
Sequences
Splice sites
3' ss Seq
ATGTATATGGTATTTAACAGACT
3' ss Score
5.77
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
Exon sequences
Seq C1 exon
AAATGATGGAAGAATTGCATAGCCTGGACCCCCGACGGCAGGAATTATTAGAGGCCAGGTTTACTGGAGTTGGTGTTAGTAAG
Seq A exon
ACTCCTGAGAAAAAACAGAATGACCAGCGAAACCGGAAAAGAAAAGCTGAACCATATGAAACTAGCCAAG
Seq C2 exon
CGGCGAGTAGAACAGCCTCTCTATGGTTTAGATGGCAGCGCTACAAAGGAGGTGTCAGAGGAGCAGTCTGCCCTGCCAACGCTTATGTCAGTGATGCTGGCAAAACCTCGGCTCGACACAGAGCAGCTGGCACAGAGGGGAGCTGGCCTCTGCTTCACTTTTGTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015713_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTGCATAGCCTGGACCCC
R:
CGAGGTTTTGCCAGCATCACT
Band lengths:
182-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development