MmuEX6102058 @ mm10
Exon Skipping
Gene
ENSMUSG00000041997 | Tlk1
Description
tousled-like kinase 1 [Source:MGI Symbol;Acc:MGI:2441683]
Coordinates
chr2:70750435-70754486:-
Coord C1 exon
chr2:70754440-70754486
Coord A exon
chr2:70752235-70752330
Coord C2 exon
chr2:70750435-70750524
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTCCCATTTCTTTTCGCAGTAC
3' ss Score
8.71
5' ss Seq
TCTGTAAGC
5' ss Score
4.33
Exon sequences
Seq C1 exon
GAAAAAGTATCGGGGGACGTGGCCATAAGATCAGCGACTATTTTGAA
Seq A exon
TACCAAGGTGGAAATGGCTCGAGTCCAGTAAGAGGCATCCCTCCAGCAATCCGTTCTCCGCAGAACTCACACTCACATTCCACTCCTTCCTCATCT
Seq C2 exon
GTTCGACCGAATAGCCCTTCTCCTACTGCATTAGCTTTCGGGGACCACCCTGTTGTACAACCAAAGCAGTTATCCTTTAAGATCACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041997-'24-17,'24-13,26-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGTATCGGGGGACGTGG
R:
TGAGTGATCTTAAAGGATAACTGCT
Band lengths:
135-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types