DreEX0079089 @ danRer10
Exon Skipping
Gene
ENSDARG00000042467 | tlk1a
Description
tousled-like kinase 1a [Source:ZFIN;Acc:ZDB-GENE-071008-2]
Coordinates
chr9:3613126-3616307:+
Coord C1 exon
chr9:3613126-3613169
Coord A exon
chr9:3614492-3614587
Coord C2 exon
chr9:3616221-3616307
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTATTTCCCTCTTTCTGTAGTTT
3' ss Score
8.52
5' ss Seq
AGCGTACGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGAAGTCTGTCATCCGGGGACCCAAAATTAGCGATTATTTTGAT
Seq A exon
TTTCACGGCGGTAACGGCTCCAGTCCAGTAAGAGGTCTACCGCCGGTCATCCGTTCTCCCCAGAACTCACATTCCCATTCTGCGCCAGGATCCAGC
Seq C2 exon
ACTCGACAGAGCAGCTCGTCTCCCACCAGTTTGTGTTTTGGGGACTCTATGATTTCTTCTAGACACATAGCGGTCAAAAGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042467_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=1.000 C2=0.431
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTCTGTCATCCGGGGA
R:
ACACTTTTGACCGCTATGTGTCT
Band lengths:
127-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]