GgaEX1058690 @ galGal4
Exon Skipping
Gene
ENSGALG00000009569 | TLK1
Description
tousled-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
Coordinates
chr7:17625261-17626852:+
Coord C1 exon
chr7:17625261-17625307
Coord A exon
chr7:17625755-17625841
Coord C2 exon
chr7:17626763-17626852
Length
87 bp
Sequences
Splice sites
3' ss Seq
GGATCATATCTTCCTTTCAGTAC
3' ss Score
6.79
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GAAAGAGTATTGGGGGACGTGGCCACAAGATTAGTGACTATTTTGAG
Seq A exon
TACCAAGGTGGAAACGGCTCTAGTCCAGTTCGAGGTGTACCTCCTGCAATCCGATCTCCTCAGAATTCACATTCCGCCCCTTCTTCT
Seq C2 exon
GTTCGACAGAATAGTCCTTCTCCTACTTCATTAGCTTTTGGGGACCACCCTACCACGCAACCAAAGCAGTTATCTTTTAAAATTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009569-'16-11,'16-10,17-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.944
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGAGTATTGGGGGACGTGG
R:
TTAAAAGATAACTGCTTTGGTTGCGT
Band lengths:
127-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]