GgaEX1058690 @ galGal3
Exon Skipping
Gene
ENSGALG00000009569 | F1P396_CHICK
Description
NA
Coordinates
chr7:19584813-19586407:+
Coord C1 exon
chr7:19584813-19584859
Coord A exon
chr7:19585308-19585394
Coord C2 exon
chr7:19586309-19586407
Length
87 bp
Sequences
Splice sites
3' ss Seq
GGATCATATCTTCCTTTCAGTAC
3' ss Score
6.79
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GAAAGAGTATTGGGGGACGTGGCCACAAGATTAGTGACTATTTTGAG
Seq A exon
TACCAAGGTGGAAACGGCTCTAGTCCAGTTCGAGGTGTACCTCCTGCAATCCGATCTCCTCAGAATTCACATTCCGCCCCTTCTTCT
Seq C2 exon
GCATTCCAGGTTCGACAGAATAGTCCTTCTCCTACTTCATTAGCTTTTGGGGACCACCCTACCACGCAACCAAAGCAGTTATCTTTTAAAATTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009569-'6-8,'6-7,7-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGAGTATTGGGGGACGTGG
R:
TAAAAGATAACTGCTTTGGTTGCGTG
Band lengths:
135-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]