DreEX0079098 @ danRer10
Exon Skipping
Gene
ENSDARG00000100715 | tlk1b
Description
tousled-like kinase 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4933]
Coordinates
chr6:3737570-3740679:-
Coord C1 exon
chr6:3740636-3740679
Coord A exon
chr6:3740288-3740377
Coord C2 exon
chr6:3737570-3737656
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATCATTTCATCTTCTTGTAGTTC
3' ss Score
7.22
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
Exon sequences
Seq C1 exon
GAAAGTCTTCCGGCCGAGGGCCTAAGATCAGCGATTATTTTGAT
Seq A exon
TTCCAGGGAGGAAACGGATCGAGTCCAGTCCGGGGTCTTCCTCCGGTCCTGCGCTCGCCACAGAACTCTCACTCTGTGCCTGGAGCCATC
Seq C2 exon
GTCAGACAGAACAGCTCATCACCCACCAGCCTGTGTTTCATGGATCACACGATGAATCTGAAACAGCTGAGCAGCAGAAGTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100715-'7-9,'7-7,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.678
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTCTTCCGGCCGAGG
R:
CTGGACACTTCTGCTGCTCAG
Band lengths:
131-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]