BtaEX0036530 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006918 | TLK1
Description
tousled-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
Coordinates
chr2:25433507-25437646:+
Coord C1 exon
chr2:25433507-25433553
Coord A exon
chr2:25435481-25435576
Coord C2 exon
chr2:25437557-25437646
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGTTTCCTTTTACCCTCAGTAC
3' ss Score
8.58
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GAAAAAGTATTGGGGGACGTGGCCACAAAATTAGCGACTATTTTGAA
Seq A exon
TACCAAGGTGGAAATGGCTCAAGTCCAGTAAGAGGCATACCTCCTGCAATCCGTTCGCCTCAAAATTCACATTCACATTCCACGCCTTCTTCATCT
Seq C2 exon
GTTCGACCGAATAGCCCTTCTCCTACTGCGTTAGCTTTTGGGGACCACCCTATTGTACAGCCAAAGCAGTTATCCTTTAAAATTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006918_MULTIEX1-2/12=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.733
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGTATTGGGGGACGTGGC
R:
TTTTAAAGGATAACTGCTTTGGCTG
Band lengths:
127-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development