DreEX0080089 @ danRer10
Exon Skipping
Gene
ENSDARG00000021948 | tnc
Description
tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]
Coordinates
chr5:27989785-27995569:-
Coord C1 exon
chr5:27995300-27995569
Coord A exon
chr5:27992200-27992385
Coord C2 exon
chr5:27989785-27989874
Length
186 bp
Sequences
Splice sites
3' ss Seq
CGCATGTTGACGTGTTTTAGATC
3' ss Score
6.39
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
TGATTGATGCTCCTAGCCAGGTGGATGTGCGTGACGTGACGGACACAACAGCCCTGGTCACGTGGCTTCAGCCTGTCGCTCAGGTGGACGGCATCTCTGTTTCCTATGGCCCAAACACAGACTCCTCCGACAGGAACACAATCGAGCTTTCCTCCATAGAAACCCAGTACCATCTGGCTGAGCTGTCTCCTGACACTGAGTATGAGGTCTCTCTTATGGCCCGCCGGGGAGAGATGAGCAGCTTCCCCATCTATGAGACCTTCACAACAG
Seq A exon
ATCTGGATTCCCCAAAGCACCTCAAGGCAATTGAGCAGACAGATGAGAGCATAACTCTGGAGTGGAGAAACAGCAGAGCCAACGTCCTCAATTACCGTGTCAAATACGGCCCACTTTCTGGAGGGGAGCATGGAGAGCTGGTCTTCCCCAGCGGCCTGCAAGACACCACTCAGGCTAAGATCACTG
Seq C2 exon
GCCTCAGGCCTGGGACTGAATATGGAATGGGAGTGACTTCAATCAAGGAAGAGCGTGAGAGTTTGCCTGCTACGACCAACGCTGTGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021948-'8-13,'8-11,9-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.363 A=0.349 C2=0.839
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=87.9)
A:
PF0004116=fn3=PU(72.3=95.2)
C2:
PF0004116=fn3=PD(26.5=71.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACGGCATCTCTGTTTCC
R:
CAGGCAAACTCTCACGCTCTT
Band lengths:
256-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]