GgaEX6014927 @ galGal4
Exon Skipping
Gene
ENSGALG00000007113 | TNC
Description
tenascin precursor [Source:RefSeq peptide;Acc:NP_990787]
Coordinates
chr17:2674671-2676079:-
Coord C1 exon
chr17:2675810-2676079
Coord A exon
chr17:2675290-2675475
Coord C2 exon
chr17:2674671-2674760
Length
186 bp
Sequences
Splice sites
3' ss Seq
TATTTATATGTTTATTGCAGACT
3' ss Score
7.42
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AACTCGATGCCCCTAGCCAGATTGAAGCGAAAGATGTCACAGACACCACAGCTCTGATCACATGGTCCAAACCCTTGGCTGAAATTGAAGGCATAGAGCTCACATATGGCCCCAAGGATGTTCCAGGGGACAGGACTACCATTGACCTCTCTGAGGATGAAAACCAATATTCTATTGGAAACCTGAGGCCACACACAGAATATGAAGTGATACTCATTTCTCGGCGAGGGGACATGGAGAGTGACCCTGCAAAAGAAGTCTTTGTCACAG
Seq A exon
ACTTGGATGCTCCACGAAACCTGAAGCGAGTGTCACAGACAGACAACAGCATTACTTTGGAGTGGAAGAACAGCCATGCAAATATTGATAATTACCGAATTAAGTTTGCTCCCATTTCTGGTGGAGACCACACTGAGCTGACAGTGCCAAAGGGCAACCAAGCAACAACCAGAGCTACACTCACAG
Seq C2 exon
GTTTGAGACCTGGAACTGAATATGGCATTGGAGTGACAGCAGTGAGACAGGACAGGGAAAGTGCTCCTGCTACCATTAATGCTGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007113-'12-10,'12-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.495 A=0.556 C2=0.742
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=90.1)
A:
PF0004116=fn3=PU(71.4=95.2)
C2:
PF0004116=fn3=PD(27.4=74.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCACATATGGCCCCAAG
R:
TAGCAGGAGCACTTTCCCTGT
Band lengths:
247-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]