RnoEX0092213 @ rn6
Exon Skipping
Gene
ENSRNOG00000058645 | Tnc
Description
tenascin C [Source:RGD Symbol;Acc:621057]
Coordinates
chr5:79837995-79839602:-
Coord C1 exon
chr5:79839333-79839602
Coord A exon
chr5:79838363-79838548
Coord C2 exon
chr5:79837995-79838084
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCCCTTTCCCTCCTAAACAGGCC
3' ss Score
11.08
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCTGGATGCCCCCAGCCAAATTGAGGTGAGAGACATCACAGACACTACAGCACTGATCACCTGGTCCAAGCCCTTGGCTGAAATTGATAGCATTGAGCTCTCCTATGGCATCAAGGATGTGCCTGGAGACCGGACCACCATCGACCTCACACATGAAGACAACCAGTACTCCATCGGGAACCTGAAACCTGACACGGAGTATGAGGTGTCCCTCATCTCCCGCAGAGTGGACATGGCAAGCAACCCTGCCAAGGAGACCTTCATCACAG
Seq A exon
GCCTGGATGCTCCCAGGAATCTCCGTCGCGTCTCACAGACAGACAACAGCATCACCTTGGAGTGGAGGAATGTCAAGGCAGACATTGATAGTTATAGAATTAAGTATGCACCTATCTCTGGAGGTGACCATGCTGAGATAGATGTTCCAAAGAGCCAGCAAGCCACAACCAAAACCACACTCACAG
Seq C2 exon
GTCTAAGGCCAGGAACTGAATATGGAGTGGGCGTCTCTGCTGTTAAGGGAGACAAGGAGGGCGATCCAGCAACCATCAATGCAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058645-'12-17,'12-16,13-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.363 A=0.508 C2=0.839
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.0)
A:
PF0004116=fn3=PU(71.4=95.2)
C2:
PF0004116=fn3=PD(27.4=74.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGATCACCTGGTCCAAGC
R:
AGAGACGCCCACTCCATATTCA
Band lengths:
257-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]