DreEX0081365 @ danRer10
Exon Skipping
Gene
ENSDARG00000005679 | trip10a
Description
thyroid hormone receptor interactor 10a [Source:ZFIN;Acc:ZDB-GENE-041114-105]
Coordinates
chr3:54186577-54200552:-
Coord C1 exon
chr3:54200364-54200552
Coord A exon
chr3:54189543-54189707
Coord C2 exon
chr3:54186577-54186686
Length
165 bp
Sequences
Splice sites
3' ss Seq
GTGCCTGGTGTCTGTCCCAGCTC
3' ss Score
7.4
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GACTCTATGGTTCTCATAGAGCAACATAAGTCTGGTTTTGAGAGACCGGGAGATCTGGACTTTGAGGACTACAGTCAGGGCATCAACCGGGCCTCATCAGACAGCAGTCTAGGCACTCCGAAAGGACCCTTAGAGCTGTTGGGCAAGAACAAGAATAAAACATTCCGGTTGTTCAATAAAAAGAGCAAG
Seq A exon
CTCCCTTCGTCCTCGCTCAGTCCTTACTCCACACCCCCAATCCCCTCGCCTGCTAATGGACCCCCTTCCCCCAAGTTTGGCCGGGACCCTCTGTCGTACTGTTTGAAGGAAATCAATAAGACAGTCAAACCCCGAATCTCGTCCTTCCGGACCCTCAAGAGAACG
Seq C2 exon
CCGGTGGACACAGAAGGCTTCACTCATCTTCCTCCAGAGCAGCGTCGCAAACGCCTGCAGCAGAAGATCGACGACATGAGCAAGGAGCTGCAGAAGGAAATGGATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005679_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.604 A=0.691 C2=0.987
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127952=MscS_porin=PU(26.9=67.6)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGACCGGGAGATCTGGAC
R:
TTTCCTTCTGCAGCTCCTTGC
Band lengths:
250-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]