DreEX0081944 @ danRer10
Exon Skipping
Gene
ENSDARG00000007918 | ttc27
Description
tetratricopeptide repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-030102-1]
Coordinates
chr17:22917726-22925114:+
Coord C1 exon
chr17:22917726-22917923
Coord A exon
chr17:22919031-22919142
Coord C2 exon
chr17:22925014-22925114
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTTATGTGTTATATTTATAGGCG
3' ss Score
7.93
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTTCTGGAAATCCTGGTGCAAGCAGTAGTGGATAATCTAACCGATCACCGGGGCGAACAGGCCTCCATTCTCAGACCCAAACTCCAGGAGCTTTTGGGCAGAGTGTCGTCCCGCTGCAGCACAGACGCACAGATATGGAAACAGTACGCCCGTCTTTATGGCGATGGACATAGCAACAATGCAGAAGACAATGAAAAG
Seq A exon
GCGCTGCAGTTTCTGAGTAAAGCTCATCGATGTGAAACGCAGGCGGCTGGATGGGAGAAAGACACAGGCAGCTTCAAATCTGTGGTGAAAGGTGCCAGAGACATGGCTAATG
Seq C2 exon
TGTCCATCAGCTGCAGCAGGTCGAAACGCAGTCCTCAAGAGGCTCTGCAGCTGCTGTCTTCAGCTCGACTCAGTCTGAAGAGTCTGACCACCAAAGCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007918-'22-32,'22-31,23-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAACAGGCCTCCATTCTCAG
R:
CTGGCTTTGGTGGTCAGACTC
Band lengths:
245-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]