GgaEX1060964 @ galGal4
Exon Skipping
Gene
ENSGALG00000010538 | TTC27
Description
tetratricopeptide repeat protein 27 [Source:RefSeq peptide;Acc:NP_001012585]
Coordinates
chr3:30722727-30727571:-
Coord C1 exon
chr3:30727374-30727571
Coord A exon
chr3:30723494-30723605
Coord C2 exon
chr3:30722727-30722827
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTCCTTCCTTGCAGTCA
3' ss Score
10.94
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GTTTTGGCTATTCTGGTCAGAGCAGTAGTGGATGGAATGGCAGATCGCACTGGCGAAGCAGCAAGTGGATTGAAGGGGAAATTGCGAGAGCTGTTGGGCAGAGTGACTTCACGAGTGACAAATGATGGGGAAATCTGGAGACTTTATGCCCGACTTTATGGAAATGGACACAGTGATAGCAGTGAAGATATTGAAAAG
Seq A exon
TCACTGCAGTGTCTTACTAAGGCACATAAATGTGAAATTCAGTCAAATGATTGGGAGAAAGATGTTTCTTCTTTTAAGGAAGTAGCGAAAGGAGCCATAGAGATTGCACATG
Seq C2 exon
TGGCTATAAAATGCAGTAAGAAGAAATCCAATAATCAGGAGGCTTTGCAGATACTTTCTTCAGCTCGGCTTAACTTACGTGGCTTGTCATCCAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010538-'45-52,'45-51,47-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCAAGTGGATTGAAGGG
R:
TTTGCTTTGGATGACAAGCCAC
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]