RnoEX0094698 @ rn6
Exon Skipping
Gene
ENSRNOG00000042932 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:RGD Symbol;Acc:1305264]
Coordinates
chr6:21737197-21743187:-
Coord C1 exon
chr6:21742990-21743187
Coord A exon
chr6:21741187-21741298
Coord C2 exon
chr6:21737197-21737297
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTTTTGTTTCCTAGGCA
3' ss Score
10.85
5' ss Seq
ATGGTACTT
5' ss Score
5.19
Exon sequences
Seq C1 exon
GTCCTTAAAATTCTGGTCAGGGCAGTGGTTAATGGTATGGCTGACCGGAGTGGAGATATTGCCTCCAGCCTCAAAGGCAAGCTGCAGGAGTTGTTCGGCAGAGTCACTTCAAGGGTGACGAATGACGGAGAAGTCTGGAGACTGTATGCCCAAGTACATGGGAATGGGCAGAGTGAGAAGCCTGCTGAGAATGACAAG
Seq A exon
GCATTCCAGTATCTCTCAAAGGCGTACAAGTGCGACACACAGTCCGGTTGTTGGGAGAAAGATGCTACAGCATTTAAGGAAGTTGTTCAAAGAGCCATAGGACTGGCGCATG
Seq C2 exon
TGGCTATAAAATGCAGTGAGAGCAAGTCCAGTCCCCAGGAAGCTATACAAGCACTTTCTTCAGTCCGGCTCAATTTACGTGGCTTGTTATCCAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042932-'42-36,'42-35,44-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTCAGGGCAGTGGTTAA
R:
GCCGGACTGAAGAAAGTGCTT
Band lengths:
256-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]