DreEX0081953 @ danRer10
Exon Skipping
Gene
ENSDARG00000007918 | ttc27
Description
tetratricopeptide repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-030102-1]
Coordinates
chr17:22830473-22890379:+
Coord C1 exon
chr17:22830473-22830586
Coord A exon
chr17:22846143-22846238
Coord C2 exon
chr17:22890257-22890379
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGACTTTGTTTGCCTTCAGACT
3' ss Score
8.49
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGTTTGCTGTCTCAGCCTAAGTTCTGGGCTGTGGAAGTGACATCTCTGTGTCTGAGGACTAAGCTGGAGAGAGGAAGCTCACGGAGAGTTGAACGTGCCATGATGCAAACACAG
Seq A exon
ACTCTGGTGGATTTCTTCAGTGAGAAGGACTGTCCCGTCACGGAGAGGCTGAAGATGTTCTACAGCTGCCGGGCTCCTCCTCTCTGGGATCTACAG
Seq C2 exon
AGGCAGTTGGCGAGTCTGTTGACTGATTTGGGCCTGACTAGTTCTGCACTGCTGATCTACGAGAGACTGGAGCTCTGGGAGGATGCAGTTGTGTGTCTGGAGAGGATGGGACAGCATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007918_MULTIEX3-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF132811=DUF4071=PU(11.5=46.9)
C2:
PF132811=DUF4071=FE(30.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCTGTGGAAGTGACATC
R:
CTCCCAGAGCTCCAGTCTCTC
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]