GgaEX1060968 @ galGal3
Exon Skipping
Gene
ENSGALG00000010538 | TTC27
Description
NA
Coordinates
chr3:32639460-32661718:-
Coord C1 exon
chr3:32661605-32661718
Coord A exon
chr3:32641715-32641810
Coord C2 exon
chr3:32639460-32639582
Length
96 bp
Sequences
Splice sites
3' ss Seq
AATGTGCTTATTATTTACAGGCA
3' ss Score
6.88
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
TGTTTGCTCTCTCAACCGAAGTTCTGGGCCATTCAAACTTCAGCCTTACTTCTTCGGACCAAGCTTGAGAAAGGAAGCACTCGTAGAATGGAACGAGCAATGAAGCAGACACAG
Seq A exon
GCACTTGCAGACCAATTTGAGGATGTAAATACTTCAGTATCTGAACGCATGAAGATTTTCTACTGTTGTCAGGTGCCTCCACATTGGGCCATACAG
Seq C2 exon
CGTCAGCTTGCAAGCTTACTCTTTGAGCTTGGGTGCACCAGCTCTGCCTTACAGATATATGAGGAGCTGGAAATGTGGGAAGATGCAGTAATCTGCTATGAAAGAGCAGGACAGCATGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010538-'15-24,'15-23,16-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGAAGTTCTGGGCCATTC
R:
TCCCACATTTCCAGCTCCTCA
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]