RnoEX6027684 @ rn6
Exon Skipping
Gene
ENSRNOG00000042932 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:RGD Symbol;Acc:1305264]
Coordinates
chr6:21815385-21827554:-
Coord C1 exon
chr6:21827441-21827554
Coord A exon
chr6:21818511-21818606
Coord C2 exon
chr6:21815385-21815507
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGATTTTATGTATTCTTTAGGCT
3' ss Score
8.43
5' ss Seq
GAGGTACTT
5' ss Score
7.82
Exon sequences
Seq C1 exon
TGTTTACTTTCACAACCAAAGTTCTGGGCCATTCAGACCTCAGCCTTGATCCTCCGGACAAAACTTGAGAGAGGAAGCACACGGCGAGTGGAGCGGGCAATGAGGCAGACCCAG
Seq A exon
GCTCTTGCAGACCAATTTGAAGATAAAACCACATCTGTACTGGAGCGTCTGAAGATTTTCTACTGCTGTCAAGTGCCCCCTCACTGGGCTGTCGAG
Seq C2 exon
CGCCAGCTCGCAGGTTTGCTGTTTGAGTTGGGATGCACCAGCTCAGCCCTGCAGATATTTGAGAAGCTGGAGATGTGGGAGGACGTAGTCATCTGCCATGAAAGGGCTGGGCAGCACGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042932-'20-25,'20-23,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTCAGCCTTGATCCTCC
R:
GCAGATGACTACGTCCTCCCA
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]