DreEX0084285 @ danRer10
Exon Skipping
Gene
ENSDARG00000040466 | vil1
Description
villin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-799]
Coordinates
chr9:45112497-45114925:-
Coord C1 exon
chr9:45114737-45114925
Coord A exon
chr9:45113480-45113548
Coord C2 exon
chr9:45112497-45112652
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTATCCTTTTTTAGGAA
3' ss Score
12.84
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTGTACCTGTGGATCGGAAAAGGTGCCAATGACACAGAGAAGCGTGAAGCGGTGGTTACAGCACAGGAGTATCTGAAGTCCCACCCTGCTGGCCGTGACCTGGATACACCTGTTCTTGTGGTGAAACAAGGTTTTGAACCACCCACCTTTACAGGATGGTTCCACGCCTGGGACCCACAAAAGTGGAGT
Seq A exon
GAAGGGAAATCTTACGACCAGCTTAAAGCAGAGCTTGGGGATGCAACTGATGTTATCAAAATTACTGTG
Seq C2 exon
GATCTGACCCAACCATCCTCAAACCAAACCAACTCAAGTAACTCAACTCAAGGAGGTTCGATGCCCCGTCCTGTAACACAAACCTTTCCTGCAGAGAAGCTGGTGAACGTTCAGACAGAAGACCTGCCTGAGGGAGTCGACCCCACAAGAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040466-'21-22,'21-21,22-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.130 C2=0.981
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.3=79.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACAGGATGGTTCCACGCC
R:
GGCAGGTCTTCTGTCTGAACG
Band lengths:
170-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]