MmuEX0051345 @ mm10
Exon Skipping
Gene
ENSMUSG00000026175 | Vil1
Description
villin 1 [Source:MGI Symbol;Acc:MGI:98930]
Coordinates
chr1:74428067-74432431:+
Coord C1 exon
chr1:74428067-74428255
Coord A exon
chr1:74430617-74430685
Coord C2 exon
chr1:74432291-74432431
Length
69 bp
Sequences
Splice sites
3' ss Seq
GTTGTGTACTTTATTTGCAGAAC
3' ss Score
8.23
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
GTCTTCTTCTGGATAGGGAAACATGCCAATGAGGAAGAGAAGAAGGCTGCAGCTACAACTGTACAAGAATACCTCAAGACCCACCCTGGAAACCGAGACCTTGAGACCCCTATCATCGTGGTGAAGCAGGGACACGAGCCCCCCACCTTCACAGGCTGGTTCCTGGCTTGGGATCCCTTCAAGTGGAGT
Seq A exon
AACACCAAATCCTATGATGACCTTAAGGCAGAGCTGGGAAACTCTGGGGACTGGAGCCAGATTGCTGAC
Seq C2 exon
GAGGTTATGAGCCCGAAAGTGGACGTTTTCACTGCCAATACCAGTCTGAGTTCTGGGCCCCTGCCCACCTTCCCCCTGGAGCAGCTGGTAAACAAGTCTGTAGAGGATCTCCCTGAGGGTGTGGACCCCAGCAGGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026175-'36-37,'36-34,38-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.033 C2=0.388
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(64.1=79.4)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000027366fB19309
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCTCAAGACCCACCCTGG
R:
GGCCCAGAACTCAGACTGGTA
Band lengths:
180-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types