GgaEX1063093 @ galGal4
Exon Skipping
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22032880-22033555:-
Coord C1 exon
chr7:22033367-22033555
Coord A exon
chr7:22033202-22033270
Coord C2 exon
chr7:22032880-22033017
Length
69 bp
Sequences
Splice sites
3' ss Seq
TAACACTTCTGTTCCTGCAGGAC
3' ss Score
10.02
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
ATTTTCTTCTGGATCGGGAAAGGTGCCAATGAGTCAGAGAAGGAGGCGGCAGCAGAGACAGCACAGGAGTACCTGCGGAGTCACCCCGGCAGCCGTGACCTCGACACCCCCATCATCGTGGTGAAGCAGGGCTTTGAACCCCCCACCTTCACTGGCTGGTTCATGGCCTGGGATCCCCTCTGCTGGAGC
Seq A exon
GACAGGAAATCCTACGATGAGCTGAAAGCTGAGCTGGGGGACAATGCCAGCATTGGGCAACTTGTGTCA
Seq C2 exon
GGGCTCACCTCCAAGAATGAGGTCTTCACAGCCACCACCACACTTGTCCCCACCAAGCTGGAGACCTTCCCACTGGACGTGCTGGTGAACACTGCAGCTGAGGACCTGCCCCGGGGTGTGGATCCCAGCAGGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433_MULTIEX1-11/11=10-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.000 C2=0.239
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.3=79.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATCGTGGTGAAGCAGGG
R:
CTCAGCTGCAGTGTTCACCAG
Band lengths:
181-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]