DreEX0087185 @ danRer10
Exon Skipping
Gene
ENSDARG00000070713 | zgc:162180
Description
zgc:162180 [Source:ZFIN;Acc:ZDB-GENE-070424-25]
Coordinates
chr6:39089600-39092594:+
Coord C1 exon
chr6:39089600-39089768
Coord A exon
chr6:39090143-39090411
Coord C2 exon
chr6:39092449-39092594
Length
269 bp
Sequences
Splice sites
3' ss Seq
TCACTTTTACTTGCTTTCAGTAT
3' ss Score
8.41
5' ss Seq
GAGGTACAA
5' ss Score
5.13
Exon sequences
Seq C1 exon
TTTGTGGACTAGCCCCTTTAAACAACCGTATTGTAGGGGGCGTGAATGCTTTTGATGGTTCATGGCCATGGCAGGTCAGTCTGCACAGCCCTATCTATGGCGGTCATTTTTGTGGAGGCTCCCTGATCAACAGTGAATGGGTGCTGACAGCTGCACACTGTTTACCTCG
Seq A exon
TATTACTACATCCAGTCTGCTTGTGTTCTTGGGAAAGACGACACAGCAGGGAGTCAACACCTATGAAATCAATCGAACTGTCAGCGTGATCACCGTTCACCCTTCCTACAACAATCTAACCAATGACAATGACATCGCTCTGCTGCACCTGTCCTCTGCTGTTACCTTCAGCAACTATATCAGACCTGTGTGTCTGGCGGCCCAGAACAGTGTCTTCCCAAATGGAACCAGCAGCTGGATCACAGGCTGGGGAAACATTCAGTTGGGAG
Seq C2 exon
TGAATCTACCTGCTCCTGGGATTCTGCAGGAGACCATGATTCCAGTAGTGCCTAATGATCAATGTAATGCTCTACTGGGTTCTGGATCTGTCACCAACAACATGATCTGTGCTGGTTTATTACAGGGAGGAAGAGACACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070713-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.9=80.7)
A:
PF0008921=Trypsin=FE(39.0=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAGCCCCTTTAAACAACCGT
R:
CAGGTGTCTCTTCCTCCCTGT
Band lengths:
304-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]