MmuEX6069399 @ mm9
Exon Skipping
Gene
ENSMUSG00000044664 | Prss42
Description
protease, serine, 42 [Source:MGI Symbol;Acc:MGI:2665280]
Coordinates
chr9:110701216-110703475:+
Coord C1 exon
chr9:110701216-110701372
Coord A exon
chr9:110701662-110701924
Coord C2 exon
chr9:110703315-110703475
Length
263 bp
Sequences
Splice sites
3' ss Seq
GCAACACATTTTTTCCATAGCCG
3' ss Score
5.55
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
TGTGTGGCCAACCCTTTATGAAGATCATGGGAGGGGTAGACGCTGAAGAGGGGAAGTGGCCTTGGCAGGTGAGCGTTCGGGTCAGGCACATGCATGTCTGTGGAGGTTCCCTCATCAATTCCCAGTGGGTGCTGACTGCCGCCCATTGTATTTACAG
Seq A exon
CCGAATCCAGTACAACGTCAAGGTGGGCGATCGGAGTGTCTACCGACAGAATACAAGTCTGGTGATTCCCATCAAGACCATCTTTGTCCACCCTAAGTTCTCAACAACTATCGTCGTTAAAAATGATATTGCTCTTCTCAAGCTCCAACACCCTGTGAATTTCACCACTAACATATACCCTGTCTGCATCCCTTCAGAGAGTTTTCCTGTAAAAGCTGGGACCAAATGTTGGGTGACAGGATGGGGAAAACTAGTGCCAGGCG
Seq C2 exon
CACCGGATGTTCCGACAGAAATCCTCCAGGAGGTGGACCAAAATGTCATCCTTTATGAGGAATGTAATGAGATGCTGAAGAAAGCTACCTCAAGTTCTGTGGATCTCGTCAAGAGAGGCATGGTCTGTGGCTATAAAGAAAGAGGAAAGGACGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044664-'3-2,'3-1,4-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.0=83.0)
A:
PF0008921=Trypsin=FE(37.9=100)
C2:
PF0008921=Trypsin=FE(22.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCATGGGAGGGGTAGACG
R:
GCAGGCGTCCTTTCCTCTTTC
Band lengths:
294-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: