HsaEX6055552 @ hg19
Exon Skipping
Gene
ENSG00000178055 | PRSS42
Description
protease, serine, 42 [Source:HGNC Symbol;Acc:30716]
Coordinates
chr3:46871032-46875166:-
Coord C1 exon
chr3:46875010-46875166
Coord A exon
chr3:46874482-46874696
Coord C2 exon
chr3:46871032-46871983
Length
215 bp
Sequences
Splice sites
3' ss Seq
TAGAGGCATCTCTTCCACAGCCG
3' ss Score
4.29
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TGTGTGGCCGAACCCCTCTGAGAATCGTGGGAGGAGTGGACGCGGAGGAAGGGAGGTGGCCCTGGCAGGTGAGCGTGAGGACCAAAGGCAGGCACATCTGCGGCGGCACCCTGGTCACCGCCACGTGGGTGCTGACGGCAGGCCACTGCATTTCCAG
Seq A exon
CCGTTTCCATTACAGTGTCAAGATGGGAGATCGGAGTGTCTATAATGAAAACACAAGTGTGGTGGTCTCAGTCCAAAGAGCTTTTGTCCACCCTAAGTTCTCAACAGTTACAACCATTCGAAATGACCTTGCCCTTCTCCAGCTCCAACATCCTGTGAATTTTACCTCAAACATCCAGCCTATCTGCATCCCTCAGGAGAATTTCCAGGTGGAAG
Seq C2 exon
GGAGATTCTGGGGGCCGCTTGGCCTGTGAATATAATGACACATGGGTCCAGGTAGGGATTGTGAGCTGGGGCATCGGCTGTGGTCGCTGAGGGTTGCCTGGAGTTTATACAGAAATTGGTGTCTACAGTAAGTGGCTGATTGCAGTGGTGGATCAGGCTACCTGTTTGTATCCAGCAGTGTTCCTCATCTTAGTCCTGCATTTGGTGCTGCCCCTGGGCATCCTGGTGGCCCAGTGATCACCCCAGCCCACTCCCCTTTTGTTTCTGAGTCTCATACTAGGCCTCTCCTCCAACCTCCCACTCCTTCTCAATGCCGTTTCTGAAAATCCCAGTTGGAATCCACGGGCCCTCTGGAGATCCATACAATAGAGCACAGCAGGGAGACTGGGGCCTGGAAAGTGCCCCTGCCTGGTGCTCTGGTCACCTGCCTCAGCCATGCCTGCACCAGGGCTGTGCTCTGGCTAGTGGGAAGGAGGGGGTGAACTAATTCCAGCTAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178055-'2-5,'2-2,3-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.6=83.0)
A:
PF0008921=Trypsin=FE(87.8=100)
C2:
PF0008921=Trypsin=PD(3.7=30.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATCGTGGGAGGAGTGGA
R:
TGATCCACCACTGCAATCAGC
Band lengths:
293-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)